from Bio import SeqIO
l: int = 0
ans = []
for seq_record in SeqIO.parse("rosalind_cons.txt", "fasta"):
if (l == 0):
l = len(seq_record.seq)
for i in range(l):
ans.append({'A': 0, 'G': 0, 'C': 0, 'T': 0})
for i in range(l):
ans[i][seq_record.seq[i]] += 1
with open("out.txt", "w") as fo:
for i in range(l):
fo.write(max(ans[i], key=ans[i].get))
fo.write('\n')
for j in ['A', 'C', 'G', 'T']:
fo.write("%s: " % j)
for i in range(l):
fo.write("%d " % ans[i][j])
fo.write("\n")
fo.close()
rosalind Consensus and Profile
发布于 2024-02-28 4 次阅读
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